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Lemieux Library
Lemieux Library

Faculty & Staff Scholarship

The College of Science and Engineering is the STEM college of Seattle University, with more than a dozen majors spanning the fields of science, mathematics, computer science, and engineering.

Books

Adams, C., Flapan, E., Henrich, A., Kauffman, L., Ludwig, L., & Nelson, S. (Eds.). (2021). Encyclopedia of Knot Theory. CRC Press.

Hainze, J. (2020). Nature Underfoot: Living with Beetles, Crabgrass, Fruit Flies, and Other Tiny Life Around Us. Yale University Press.

Book Chapters

Steiger, A. K., Fansler, S. J., Whidbey, C., Miller, C. J., & Wright, A. T. (2020). Probe-enabled approaches for function-dependent cell sorting and characterization of microbiome subpopulations. In Chenoweth, D. (Ed.), Methods in Enzymology, 638 (pp. 89–107). Academic Press. doi:10.1016/bs.mie.2020.03.014

Journal Articles

Andrews, S. S. (2020). Effects of surfaces and macromolecular crowding on bimolecular reaction rates. Physical Biology, 17(4), 045001. doi:10.1088/1478-3975/ab7f51

Andrews, S. S., & Tretton, J. (2020). Physical Principles of Circular Dichroism. Journal of Chemical Education, 97(12), 4370–4376. doi:10.1021/acs.jchemed.0c01061

Armistead, B., Herrero-Foncubierta, P., Coleman, M., Quach, P., Whidbey, C., Justicia, J., … Rajagopal, L. (2020). Lipid analogs reveal features critical for hemolysis and diminish granadaene mediated Group B Streptococcus infection. Nature Communications, 11(1). doi:10.1038/s41467-020-15282-0

Armistead, B., Whidbey, C., Iyer, L. M., Herrero-Foncubierta, P., Quach, P., Haidour, A., … Rajagopal, L. (2020). The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.03123

Bae, W. D., Kim, S., Park, C.-S., Alkobaisi, S., Lee, J., Seo, W., … Lee, J. W. (2021). Performance improvement of machine learning techniques predicting the association of exacerbation of peak expiratory flow ratio with short term exposure level to indoor air quality using adult asthmatics clustered data. PLOS ONE, 16(1), e0244233. doi:10.1371/journal.pone.0244233

Bahuaud, E., & Rochon, F. (2020). Geometrically Finite Poincaré–Einstein Metrics. Communications in Mathematical Physics, 377(3), 2159–2189. doi:10.1007/s00220-020-03713-4

Bahuaud, E., Crawford, S., Fish, A., Helliwell, D., Miller, A., Nungaray, F., … Velez, N. (2020). Apollonian sets in taxicab geometry. Rocky Mountain Journal of Mathematics, 50(1). doi:10.1216/rmj.2020.50.25

Beckert, M. V., Fischer, B. J., & Pena, J. L. (2020). Effect of Stimulus-Dependent Spike Timing on Population Coding of Sound Location in the Owl’s Auditory Midbrain. Eneuro, 7(2), ENEURO.0244–19.2020. doi:10.1523/eneuro.0244-19.2020

Carter, J. D., Dinvay, E., & Kalisch, H. (2021). Fully dispersive Boussinesq models with uneven bathymetry. Journal of Engineering Mathematics, 127(1), 1-14. https://doi.org/10.1007/s10665-021-10099-2

Correnti, C. E., Hallinan, J. P., Doyle, L. A., Ruff, R. O., Jaeger-Ruckstuhl, C. A., Xu, Y., Kaiser, B.… Bradley, P. (2020). Engineering and functionalization of large circular tandem repeat protein nanoparticles. Nature Structural & Molecular Biology, 27(4), 342–350. doi:10.1038/s41594-020-0397-5

De Rego, K., Lauer, J. W., Eaton, B., & Hassan, M. (2020). A decadal‐scale numerical model for wandering, cobble‐bedded rivers subject to disturbance. Earth Surface Processes and Landforms, 45(4), 912–927. doi:10.1002/esp.4784

Galvis, F. A., & Smith-Pardo, J. P. (2020). Axial load biaxial moment interaction (PMM) diagrams for shallow foundations: Design aids, experimental verification, and examples. Engineering Structures, 213, 110582. doi:10.1016/j.engstruct.2020.110582

Ganzell, S., & Henrich, A. (2020). Virtual mosaic knot theory. Journal of Knot Theory and Its Ramifications, 29(14), 2050091. doi:10.1142/s0218216520500911

Hajabdollahi, M., Esfandiarpoor, R., Khadivi, P., Soroushmehr, S. M. R., Karimi, N., & Samavi, S. (2020). Simplification of neural networks for skin lesion image segmentation using color channel pruning. Computerized Medical Imaging and Graphics, 82, 101729. doi:10.1016/j.compmedimag.2020.101729

Helliwell, D. (2020). Bach Flow on Homogeneous Products. Symmetry, Integrability and Geometry: Methods and Applications. doi:10.3842/sigma.2020.027

Henrich, A. (2020). Henry Segerman: Visualizing Topology. Mathematics Magazine, 93(4), 301–305. doi:10.1080/0025570x.2020.1790969

Henrich, A., Ionescu, A., Mathews, B., Ortega, I., & Tesfaye, K. (2021). KNOTRIS: A Game Inspired by Knot Theory. Math Horizons, 28(2), 8-11.

Hurt, C., Hultgren, K., Anker, A., Lemmon, A. R., Moriarty Lemmon, E., & Bracken-Grissom, H. (2021). First worldwide molecular phylogeny of the morphologically and ecologically hyperdiversified snapping shrimp genus Alpheus (Malacostraca: Decapoda). Molecular Phylogenetics and Evolution, 158, 107080. doi:10.1016/j.ympev.2021.107080

Iwanojko N., Klee, S., Lasher, B., & Volpi, E. (2020). Enumerating lattice walks with prescribed steps. Journal of Integer Sequences, 23(4).

Kang, Y., Jo, Y.-Y., Cha, J., Bae, W. D., Lee, W., & Kim, S.-W. (2020). FORESEE: An Effective and Efficient Framework for Estimating the Execution Times of IO Traces on the SSD. IEEE Transactions on Computers, 1–1. doi:10.1109/tc.2020.3038189

Kharif, C., Abid, M., Carter, J. D., & Kalisch, H. (2020). Stability of periodic progressive gravity wave solutions of the Whitham equation in the presence of vorticity. Physics Letters A, 384(2), 126060. doi:10.1016/j.physleta.2019.126060

Klee, S., & Nugent, B. (2020). Pure $\mathcal{O}$-Sequences arising from $2$-Dimensional PS Ear-Decomposable Simplicial Complexes. The Electronic Journal of Combinatorics, 27(3). doi:10.37236/8389

Klee, S., & Stamps, M. T. (2020). Linear Algebraic Techniques for Spanning Tree Enumeration. The American Mathematical Monthly, 127(4), 297–307. doi:10.1080/00029890.2020.1708171

Larson, E. R., & Pool, T. K. (2020). Biological invasions drive biotic homogenization of North American crayfishes. Hydrobiologia, 847(18), 3795–3809. doi:10.1007/s10750-019-04164-2

MacLean, M. S., & Miklavič, Š. (2020). On a certain class of 1-thin distance-regular graphs. Ars Mathematica Contemporanea, 18(2), 187–210. doi:10.26493/1855-3974.2193.0b0

McLaughlin, R. P., Parks, D. A., Grubb, A. I., Mason, G. S., & Miller, A. L. (2020). A predictive model for elemental carbon, organic carbon and total carbon based on laser induced breakdown spectroscopy measurements of filter-collected diesel particulate matter. Spectrochimica Acta Part B: Atomic Spectroscopy, 168, 105871. doi:10.1016/j.sab.2020.105871

Nguyen, T., Strebinger, C., Bogin, G. E., & Brune, J. (2021). A 2D CFD model investigation of the impact of obstacles and turbulence model on methane flame propagation. Process Safety and Environmental Protection, 146, 95–107. doi:10.1016/j.psep.2020.08.023

Ochoa, G. S., Prebihalo, S. E., Reaser, B. C., Marney, L. C., & Synovec, R. E. (2020). Statistical inference of mass channel purity from Fisher ratio analysis using comprehensive two-dimensional gas chromatography with time of flight mass spectrometry data. Journal of Chromatography A, 1627, 461401. doi:10.1016/j.chroma.2020.461401

Partanen, S. B., Erickson, P. R., Latch, D. E., Moor, K. J., & McNeill, K. (2020). Dissolved Organic Matter Singlet Oxygen Quantum Yields: Evaluation Using Time-Resolved Singlet Oxygen Phosphorescence. Environmental Science & Technology, 54(6), 3316–3324. doi:10.1021/acs.est.9b07246

Pavão, R., Sussman, E. S., Fischer, B. J., & Peña, J. L. (2020). Natural ITD statistics predict human auditory spatial perception. eLife, 9. doi:10.7554/elife.51927

Pelle, N., Ehinger, L., Zaug, C. R., & Kim, W. J. (2020). An autocollimator with sub-microradian sensitivity. American Journal of Physics, 88(7), 586–591. doi:10.1119/10.0001269

Prebihalo, S. E., Ochoa, G. S., Berrier, K. L., Skogerboe, K. J., Cameron, K. L., Trump, J. R., … Synovec, R. E. (2020). Control-Normalized Fisher Ratio Analysis of Comprehensive Two-Dimensional Gas Chromatography Time-of-Flight Mass Spectrometry Data for Enhanced Biomarker Discovery in a Metabolomic Study of Orthopedic Knee-Ligament Injury. Analytical Chemistry, 92(23), 15526–15533. doi:10.1021/acs.analchem.0c03456

Reyes, J. C., Herrera, M. T., Paul Smith-Pardo, J., & Córdoba, L. S. (2020). Effective live load mass for storage buildings on friction-pendulum isolators. Engineering Structures, 218, 110843. doi:10.1016/j.engstruct.2020.110843

Rykaczewski, K. A., Sabourin, K. E., Goo, P. J., Griggs, L. H., Jain, S., Reed, P. A. M., & Langenhan, J. M. (2020). Generation of a glycosylated asparagine residue through chemoselective acylation of a glycosylhydrazide. Carbohydrate Research, 493, 108022. doi:10.1016/j.carres.2020.108022

Sadhasivam, S., Alankar, S., Maturi, R., Vishnubhotla, R. V., Mudigonda, M., Pawale, D., Hariri, S. … Subramaniam, B. (2020). Inner Engineering Practices and Advanced 4-day Isha Yoga Retreat Are Associated with Cannabimimetic Effects with Increased Endocannabinoids and Short-Term and Sustained Improvement in Mental Health: A Prospective Observational Study of Meditators. Evidence-Based Complementary and Alternative Medicine, 2020, 1–9. doi:10.1155/2020/8438272

Sanders, J. W., Dadfarnia, M., Sehitoglu, H., Stubbins, J., & Sofronis, P. (2020). On the stress field ahead of a stationary crack tip during the transition from primary to secondary creep. International Journal of Solids and Structures, 193-194, 455–473. doi:10.1016/j.ijsolstr.2020.02.040

Sanyal, J., Wesley Lauer, J., & Kanae, S. (2021). Examining the downstream geomorphic impact of a large dam under climate change. CATENA, 196, 104850. doi:10.1016/j.catena.2020.104850

Schwartz, J. J., Hamel, J., Ekstrom, T., Ndagang, L., & Boydston, A. J. (2020). Not all PLA filaments are created equal: an experimental investigation. Rapid Prototyping Journal, 26(7), 1263–1276. doi:10.1108/rpj-06-2019-0179

Shiri, M., Berangi, R., & Khadivi, P. (2020). WLAN Bandwidth-Based Handoff from WLAN to Cellular Network Assisted by Ad hoc Relaying. Wireless Personal Communications, 114(2), 1597–1622. doi:10.1007/s11277-020-07441-9

Steinkruger, S., Grams, J., & Berger, G. (2020). Skills for Managing Difficult Encounters in Primary Care. Medical Education, 54(11), 1066–1067. doi:10.1111/medu.14307

Sudol, P. E., Pierce, K. M., Prebihalo, S. E., Skogerboe, K. J., Wright, B. W., & Synovec, R. E. (2020). Development of gas chromatographic pattern recognition and classification tools for compliance and forensic analyses of fuels: A review. Analytica Chimica Acta, 1132, 157–186. doi:10.1016/j.aca.2020.07.027

Thompson, P. L., & Porter, R. L. (2020). Potable Water for an Office Building From Rainwater Collection. Journal AWWA, 112(12), 46–54. doi:10.1002/awwa.1633

Villafañe, S., Minderhout, V., Heyen, B., Lewis, J. E., Manley, A., Murray, T. A., Tienson-Tseng, H., & Loertscher, J. (in press). Design and implementation of a tool to assess students’ understanding of metabolic dynamics and regulation. Life Sciences Education.

Whalen, M. A., Whippo, R. D. B., Stachowicz, J. J., York, P. H., Aiello, E., Alcoverro, T., Hultgren, K. … Bresch, M. (2020). Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences, 117(45), 28160–28166. doi:10.1073/pnas.2005255117

Wilson, M., Tillery, L., Tabaie, E., Beery, G., Preusker, J., Bhola, I., & Frato, K. (2020). Alanine to serine substitutions drive thermal adaptation in a psychrophilic diatom cytochrome c6. JBIC Journal of Biological Inorganic Chemistry, 25(3), 489–500. doi:10.1007/s00775-020-01777-0

Xue, J., Xie, M., Nadir, S., Lewis, J. C., Jayaratna, N. B., Arachchilage, H. J., & Norman, R. E. (2020). Synthesis and Structure of [Fe(TPA)Cl2](ClO4) and [{Fe(TPA)Cl}2O](ClO4)2 Where TPA = Tris-(2-pyridylmethyl)amine. Journal of Chemical Crystallography. doi:10.1007/s10870-020-00872-z

Zarrabi, H., Emami, A., Khadivi, P., Karimi, N., & Samavi, S. (2020). BlessMark: a blind diagnostically-lossless watermarking framework for medical applications based on deep neural networks. Multimedia Tools and Applications, 79(31-32), 22473–22495. doi:10.1007/s11042-020-08698-9

Zhang, H., Calvi, P. M., Lehman, D., Kuder, K., & Roeder, C. (2020). Response of Recycled Coarse Aggregate Concrete Subjected to Pure Shear. Journal of Structural Engineering, 146(5), 04020075. doi:10.1061/(asce)st.1943-541x.0002620

Zhang, H., Wang, Y., Lehman, D. E., Geng, Y., & Kuder, K. (2020). Time-dependent drying shrinkage model for concrete with coarse and fine recycled aggregate. Cement and Concrete Composites, 105, 103426. doi:10.1016/j.cemconcomp.2019.103426

Presentations

Abraham, S. & Connor, K. (2020). Work in Progress: Leveraging Technology Trends to Develop a Skills-Based Approach to Engineering Design [Conference Paper]. ASEE Annual Conference and Exposition.

Han, Y.-L., Cook, K., Mason, G., Shuman, T., & Turns, J. (2020). Engineering with engineers: Fostering engineering identity through industry immersion [Conference Paper]. ASEE Annual Conference and Exposition.

Han, Y.-L., Mason, G., Cook, K., Rutar Shuman, T., & Turns, J. (2020). Integrating Electrical Engineering Fundamentals with Instrumentation and Data Acquisition in an Undergraduate Mechanical Engineering Curriculum [Conference Paper]. 2020 IEEE Frontiers in Education Conference (FIE). doi:10.1109/fie44824.2020.9274210

Hanley, D.,  Miller, M., Rogan-Klyve, A., & Sorensen, J. (2021, February). Preparing University Faculty for Clinically-Oriented, Practice-Based Teacher Education [Conference Presentation]. American Association of Colleges for Teacher Education 73rd Annual Meeting.

Kim, J. G., Kong, H.-K., Hong, H., & Karahalios, K. (2020). Enriched Social Translucence in Medical Crowdfunding [Conference Paper]. Proceedings of the 2020 ACM Designing Interactive Systems Conference. doi:10.1145/3357236.3395520

Kong, H.-K., & Karahalios, K. (2020). Addressing Cognitive and Emotional Barriers in Parent-Clinician Communication through Behavioral Visualization Webtools [Conference Paper]. Proceedings of the 2020 CHI Conference on Human Factors in Computing Systems. doi:10.1145/3313831.3376181

Smith, L. D., Louie, H., Szablya, S., & Goldsmith, D. (2020). Remote Assessment of Battery Degradation-Related Service Interruptions in an Energy Kiosk [Conference Paper]. 2020 IEEE Global Humanitarian Technology Conference (GHTC). doi:10.1109/ghtc46280.2020.9342919

Taylor, M., Westra, K., & Han, Y.-L. (2020). Developing a Thermally Actuated Soft Robot for Finger Rehabilitation [Conference Paper]. ASME 2020 International Mechanical Engineering Congress and Exposition, Volume 5: Biomedical and Biotechnology. doi:10.1115/imece2020-23134